Table 1

Oligonucleotide primers.

Primer
Sequence (5'→ 3')a
Targetb

P1
cgggaattcATGAATAATGATAATATTGGGAG
pfk1 full length (+)
P2
cccaagcttTCAGACTTGGTCATGCGGTTC
pfk1 full length (-)
P3
cgggaattcGTTGATAAGAAAGGAAAAATAATAGAT
pfk1 F2 (+)
P4
cccaagcttATGTACAAATCGATGTTTTGTATA
pfk1 F2 (-)
P5
ccgggaattcatTTTAATAATCATGATCATCAGAATC
pfk1 F3 (+)
P6
cccaagcttTAAACATTCTTGATCATCTTTTTCC
pfk1 F3 (-)
P7
ccgggaattctcAAAAAAGGACAAAACCATCAACTT
pfk1 F4 (+)
P8
cccaagcttCATATTTTTTTCCATATCTTTAATG
pfk1 F4 (-)
P9
cgcggatccgATGAAAAGCGGATTATTTTCTATG
pfk2 full length (+)
P10
ccggaattcTCACAATATATAAACTATATCATCGAATC
pfk2 full length (-)
P11
ccgggaattcATAATGATAATGATAATAATAATATTATA
pfk2 F3 (+)
P12
cccaagctttTTTAATTCCTTTTTATTATCAATTGT
pfk2 F3 (-)
P13
ccgggaattcGAATATCAAGAATATTTACCAAAAAC
pfk2 F4 (+)
P14
cccaagcttATTATGAATATGAATATTTGTATTTGA
pfk2 F4 (-)
P15
aaactgcagTGAAAACAGAATGCGATTAGTTCG
pfk1 KO (+)
P16
cgcggatccGATGATGCAAATGTTAATGGTAC
pfk1 KO (-)
P17
aaactgcagTTCTTATCTTATTGAACGGATCTC
pfk2 KO (+)
P18
cgcggatccTTGTATGGTATATATAGTAGATGC
pfk2 KO (-)
P19
GATAGCGATTTTTTTTACTGTCTG
hrp2 3'UTR (+)
P20
GAAATTAACCCTCACTAAAGGG
plasmid backbone
P21
aaggaaaaaagcggccgcAATGAATAATGATAATATTGGGAG
pfk1 (+)
P22
cccaagcttAGATATAATACCATCCGTTTGG
pfk1 (-)
P23
ccggaattcAATGAAAAGCGGATTATTTTCTATG
pfk2 (+)
P24
cgcggatccTTGTATGGTATATATAGTAGATGC
pfk2 (-)
P25
TTGTTGTGGTTCTACATCTCC
pfk2 (-)
P26
CACGAAGCCGCCACACATTGCC
hrp2 orf1
P27
TTTGATCTTGTTCACTATGGC
pfk1 (-)
P28
cccaagcttATTACAAAAATAATAATTGAAATTACT
pfk2 (-)
P29
GTAATACGACTCACTATAGGGC
plasmid backbone
P30
TTGCAATTCTGCTTCAGTTGG
cam (-)

a Sequences shown in upper case are gene specific. Underlined sequences indicate enzyme restriction sites.

b + and - indicate sense and anti-sense strand sequences, respectively.

Waller et al. Malaria Journal 2008 7:19   doi:10.1186/1475-2875-7-19

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