|
SINE200 primer list. |
||||
| Locus |
SINE200 coordinate |
Primer pair (forward/reverse) |
Product size (bp) |
Annotated genes (in 20 Kb) |
|
|
||||
| S200 X6.1 |
Chromosome X: |
5'-TCGCCTTAGACCTTGCGTTA-3' |
479 |
AGAP001076 |
| 22951445–22951671 |
5'-CGCTTCAAGAATTCGAGATAC-3' |
(CYP4G16 gene) |
||
| S200 X6.2 |
Chromosome X: |
5'-TCGGGCCAATATAACACAC-3' |
588 |
AGAP001094 |
| 24225524–24225731 |
5'-AGGCGCCATGTACGTAACC-3' |
|||
| S200 2L20A.1 |
Chromosome 2L: |
5'-TGCCCTGTTCAAGATTTCAT-3' |
564 |
none |
| 641051–641259 |
5'-GGTCACTCACGCATACCGTCT-3' |
|||
| S200 2L20A.2 |
Chromosome 2L: |
5'-ACGCCAGACGGTTTCATATC-3' |
611 |
none |
| 977287–977497 |
5'-CCTATCTTTAATTTATATTCGC-3' |
|||
| S200 2L20B.1 |
Chromosome 2L: |
5'-AACCTTACAATACACAAGAAC-3' |
495 |
AGAP004725 |
| 2796669–2796889 |
5'-CAGGAAAACGACTACTCGAAC-3' |
AGAP004726 |
||
| S200 2L20B.2 |
Chromosome 2L: |
5'-CGCGTTGATTAATAATCCCAC-3' |
483 |
none |
| 1191908–1192118 |
5'-CCAGTCTCTGGACATGCTG-3' |
|||
| S200 2L20B.3 |
Chromosome 2L: |
5'-TTATCTGCGCGTGAGTGG-3' |
515 |
Intron of AGAP004691 |
| 1276754–1276921 |
5'-ATACCGCCTAAACGCATG-3' |
(LIM gene) |
||
| S200 2R12D |
Chromosome 2R: |
5'-AGAATGAATTGTATGGAACAGG-3' |
535 |
AGAP002640 |
| 24868905–24869106 |
5'-CTATTAAATGTGTCTCGCTCG-3' |
(GPR-OR38 gene) |
||
|
SINE200 locus names, chromosomal locations and coordinates, PCR primers, 'filled' PCR product sizes and annotated genes within 20 Kb including the SINE200 loci investigated are indicated by Ensemble Gene ID, gene names are in brackets. | ||||
Santolamazza et al. Malaria Journal 2008 7:163 doi:10.1186/1475-2875-7-163 |
||||