Table 2

Assay methodologies used by study participants

Lab No.
Nucleic Acid Extraction
Nucleic Acid Amplification
Sequence Targeted

1A
QIAamp DNA Mini Blood Kit
Qiagen Taq DNA polymerase
Small subunit rRNAa
1B
QIAamp DNA Mini Blood Kit
TaqMan® universal Master MIX
Conserved ATS domain of var genes
2A
QIAamp DNA Blood kit
Eppendorf Master Mix 2.5 × kit, gel based assay
18S rRNAb
2B
QIAamp DNA Blood kit
QuantiTectProbe PCR Kit, real-time PCR
18S rRNAb
3A
MagNA Pure LC Total Nucleic Acid Isolation Kit
LightCycler Fast Start DNA Master SYBRGreen I
18S rRNA
3B
MagNA Pure LC Total Nucleic Acid Isolation Kit
RealArt™ Malaria LC PCR Kit
18S rRNA
4
QIAamp DNA Blood Mini Kit
MBI Taq DNA polymerase
Small subunit rRNA genea
5
Boom et al., 1990 [20]
RNA T7 Polymerase, AMV-RT, RNAse H, bioMerieux
18S rRNAc
6
MagNA Pure LC DNA Isolation Kit I
LightCycler FastStart DNA MasterPLUS Hybprobe
18S rRNA
7
QIAamp DNA Mini Kit
Taqman 2 × Universal PCR Mastermix
β-tubulind
8
QIAamp DNA Mini Kit
TaqMan® Universal Master Mix
18S rRNAb
9
QIAamp DNA Mini Blood Kit
N/A
18S rRNA
10A
QIAamp DNA Mini Blood Kit
Bioline Taq Polymerase
18S rRNAa
10B
QIAamp DNA Mini Blood Kit
Fast Start DNA Sybr Green Kit
18S rRNA
11A
Roche High Pure PCR Template Preparation Kit
Applera Taq Polymerase, Applied Biosystems
18S rRNAe
11B
Roche High Pure PCR Template Preparation Kit
2 × Taqman Universal
18S rRNAa
12
QIAamp DNA Mini Blood Kit
AmpliTaq Gold DNA Polymerase
18S rRNAa
13
QIAamp DNA Blood/Mini Kit
artus Malaria PCR Kit
18S rRNA
14
High Pure PCR Template Preparation Kit
Applied Biosystems Taq Polymerase
18S rRNAe

Assays performed according to the following published methods a[18,19], b [extraction method only, [20]], c[21], d[22], e[23], For other assays there were either no previously published methods or the information was not disclosed

Padley et al. Malaria Journal 2008 7:139   doi:10.1186/1475-2875-7-139

Open Data