Table 2 |
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Assay methodologies used by study participants |
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| Lab No. |
Nucleic Acid Extraction |
Nucleic Acid Amplification |
Sequence Targeted |
|
|
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| 1A |
QIAamp DNA Mini Blood Kit |
Qiagen Taq DNA polymerase |
Small subunit rRNAa |
| 1B |
QIAamp DNA Mini Blood Kit |
TaqMan® universal Master MIX |
Conserved ATS domain of var genes |
| 2A |
QIAamp DNA Blood kit |
Eppendorf Master Mix 2.5 × kit, gel based assay |
18S rRNAb |
| 2B |
QIAamp DNA Blood kit |
QuantiTectProbe PCR Kit, real-time PCR |
18S rRNAb |
| 3A |
MagNA Pure LC Total Nucleic Acid Isolation Kit |
LightCycler Fast Start DNA Master SYBRGreen I |
18S rRNA |
| 3B |
MagNA Pure LC Total Nucleic Acid Isolation Kit |
RealArt™ Malaria LC PCR Kit |
18S rRNA |
| 4 |
QIAamp DNA Blood Mini Kit |
MBI Taq DNA polymerase |
Small subunit rRNA genea |
| 5 |
Boom et al., 1990 [20] |
RNA T7 Polymerase, AMV-RT, RNAse H, bioMerieux |
18S rRNAc |
| 6 |
MagNA Pure LC DNA Isolation Kit I |
LightCycler FastStart DNA MasterPLUS Hybprobe |
18S rRNA |
| 7 |
QIAamp DNA Mini Kit |
Taqman 2 × Universal PCR Mastermix |
β-tubulind |
| 8 |
QIAamp DNA Mini Kit |
TaqMan® Universal Master Mix |
18S rRNAb |
| 9 |
QIAamp DNA Mini Blood Kit |
N/A |
18S rRNA |
| 10A |
QIAamp DNA Mini Blood Kit |
Bioline Taq Polymerase |
18S rRNAa |
| 10B |
QIAamp DNA Mini Blood Kit |
Fast Start DNA Sybr Green Kit |
18S rRNA |
| 11A |
Roche High Pure PCR Template Preparation Kit |
Applera Taq Polymerase, Applied Biosystems |
18S rRNAe |
| 11B |
Roche High Pure PCR Template Preparation Kit |
2 × Taqman Universal |
18S rRNAa |
| 12 |
QIAamp DNA Mini Blood Kit |
AmpliTaq Gold DNA Polymerase |
18S rRNAa |
| 13 |
QIAamp DNA Blood/Mini Kit |
artus Malaria PCR Kit |
18S rRNA |
| 14 |
High Pure PCR Template Preparation Kit |
Applied Biosystems Taq Polymerase |
18S rRNAe |
|
|
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Assays performed according to the following published methods a[18,19], b [extraction method only, [20]], c[21], d[22], e[23], For other assays there were either no previously published methods or the information was not disclosed |
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Padley et al. Malaria Journal 2008 7:139 doi:10.1186/1475-2875-7-139 |
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