Figure 3.

Example parameter file for MalHaploFreq. Parameters required to run MalHaploFreq are read from an external file 'MHFparameters.txt' in the following format. Descriptions for the parameter values are provided to the right of the arrow and are self-explanatory. The parameter values are to the left of the arrow; for example, the first parameter instructs MalHaploFreq to investigate haplotypes defined at only a single codon.